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  1. bcb.unl.edu › dbCAN2dbCAN3 server - University of Nebraska–Lincoln

    dbCAN3 server allows users predict glycan substrates for CAZymes by searching against dbCAN-sub, and for CAZyme gene clusters (CGCs) by using two approaches: searching against PULs of dbCAN-PUL and dbCAN-sub majority voting

    • Home

      What is dbCAN3 . dbCAN3 server is a web server for automated...

    • Annotate

      Please use http://dbcan.unl.edu/dbcan/ mirror site in the...

    • Example result

      1. dbCAN-PUL searching parameters: 1.1 blastp parameters:...

    • Help

      Approach A (dbCAN-sub HMMdb): For a query CAZyme, dbCAN3 can...

    • About us

      dbCAN3 server team: Yanbin Yin (yanbin.yin@gmail.com):...

    • dbCAN

      dbCAN make all pre-computed data freely available to the...

    • Obsolete

      What is dbCAN2 meta server? dbCAN2 meta server is a web...

  2. bcb.unl.edu › dbCANdbCAN: An HMM-based DataBase for Carbohydrate-active enzyme ...

    dbCAN make all pre-computed data freely available to the public, including sequence alignments, hidden markov models (HMMs) and phylogenies of the signature domain regions in each and every CAZyme family and subfamily.

  3. aca.unl.edu › dbCAN3 › indexdbCAN3 server

    dbCAN3 server allows users predict glycan substrates for CAZymes by searching against dbCAN-sub, and for CAZyme gene clusters (CGCs) by using two approaches: searching against PULs of dbCAN-PUL and dbCAN-sub majority voting

  4. bcb.unl.edu › dbCAN2 › blastdbCAN3 server - University of Nebraska–Lincoln

    25 de may. de 2022 · Please use http://dbcan.unl.edu/dbcan/ mirror site in the future when this happens again. 8/2/2023 : dbCAN HMMdb v12.0 is released; see readme.txt for details. The DIAMOND db is also updated (7/26/2023). 2/11/2023 : You can now predict substrates for CAZymes and CGCs!

  5. academic.oup.com › nar › articledbCAN3: automated carbohydrate-active enzyme and substrate ...

    1 de may. de 2023 · The dbCAN-sub HMMdb database will be a new addition to our dbCAN family tool suite (dbCAN, dbCAN-seq, dbCAN-PUL, eCAMI). The dbCAN3 web server will continue to serve the carbohydrate and microbiome research communities with the state-of-the-art tools for automated CAZymes, CGCs and substrate annotation.

  6. github.com › linnabrown › run_dbcanGitHub - linnabrown/run_dbcan: Run_dbcan V4, using genomes ...

    run_dbcan is the standalone version of the dbCAN3 annotation tool for automated CAZyme annotation. This tool, known as run_dbcan , incorporates HMMER, Diamond, and dbCAN_sub for annotating CAZyme families, and integrates Cazyme Gene Clusters (CGCs) and substrate predictions.

  7. academic.oup.com › nar › articledbCAN: a web resource for automated carbohydrate-active ...

    29 de may. de 2012 · We have developed a web resource, dbCAN (http://csbl.bmb.uga.edu/dbCAN/annotate.php), to provide a capability for automated CAZyme signature domain-based annotation for any given protein data set (e.g. proteins from a newly sequenced genome) submitted to our server.