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Patric Gabarron
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Sassuolo The BV-BRC combines the data and tools from the Legacy BRC resources: PATRIC, the bacterial BRC, and IRD and ViPR, the viral BRCs. If you are transitioning from PATRIC or IRD/ViPR, please refer to the Quick Start Guide to learn how to get started with BV-BRC.
31 de ene. de 2017 · PATRIC is the Bacterial Bioinformatics Resource Center, an information system designed to support the biomedical research community’s work on bacterial infectious diseases via integration of vital pathogen information with rich data and analysis tools.
The Pathosystems Resource Integration Center (PATRIC) is the all-bacterial Bioinformatics Resource Center (BRC) (http://www.patricbrc.org). A joint effort by two of the original National Institute of Allergy and Infectious Diseases-funded BRCs, PATRIC provides researchers with an online resource tha ….
- Alice R. Wattam, David Abraham, Oral Dalay, Terry Disz, Timothy Driscoll, Joseph L. Gabbard, Joseph ...
- 2014
Specifically, PATRIC provides scientists with (i) a comprehensive bacterial genomics database, (ii) a plethora of associated data relevant to genomic analysis, and (iii) an extensive suite of computational tools and platforms for bioinformatics analysis.
- Introduction
- New Data
- New Analytical Capabilities
- Future Improvements
- Funding
In 2002, the National Institute of Allergy and Infectious Diseases (NIAID) developed a strategic plan for Biodefense research that defined the ‘Priority Pathogens’ and developed a subsequent watch list of genera, categorized as A, B and C priority microbial pathogens (http://www.niaid.nih.gov/topics/biodefenserelated/biodefense/pages/cata.aspx). Th...
In its current incarnation, PATRIC hosts data from all the NIAID priority pathogenic bacteria, which include 22 genera. However, to understand the virulence and pathogenicity that sets these bacteria apart from their nonpathogenic relatives, it also includes data for all publicly available assembled bacterial genomes sequences. As of September 2013...
PATRIC is designed primarily to allow experimental biologists to view and analyze data in an easy and efficient manner. The processes, tools and viewers used to find and analyze the data integrated within PATRIC are described below, as well as the process for researchers to upload and explore their private data with PATRIC.
Planned improvements in PATRIC include integrating additional data types, annotation enhancements to RAST annotations and expanding the Bring Your Own Data (BYOD) concept.
Funding for open access charge: National Institute of Allergy and Infectious Diseases, National Institutes of Health, Department of Health and Human Service [Contract No. HHSN272200900040C]. Conflict of interest statement. None declared.
- Alice R. Wattam, David Abraham, Oral Dalay, Terry Disz, Timothy Driscoll, Joseph L. Gabbard, Joseph ...
- 2014
BV-BRC combines the data, technology, and extensive user communities from two long-running centers: PATRIC, the bacterial system , and IRD/ViPR, the viral systems.
31 de oct. de 2019 · PATRIC supports bioinformatic analyses of all bacteria with a special emphasis on pathogens, offering a rich comparative analysis environment that provides users with access to over 250 000 uniformly annotated and publicly available genomes with curated metadata.
